IDPbyNMR – Publications
- Structural Characterization of Intrinsically Disordered Proteins by NMR Spectroscopy
Peter Tompa; Cesyen Cedeño; Simone Kosol; Sara Contreras-Martos
MDPI AG Molecules, Vol 18, Iss 9, Pp 10802-10828 (2013) 2013
doi:10.3390/molecules180910802 - Functional Diversity and Structural Disorder in the Human Ubiquitination Pathway
Bhowmick, Pallab; Pancsa, Rita; Guharoy, Mainak; Tompa, Peter
Public Library of Science PLoS ONE, Vol 8, Iss 5, p e65443 (2013) 2013
doi:10.1371/journal.pone.0065443, pmc:PMC3667038 - Linking functions: an additional role for an intrinsically disordered linker domain in the transcriptional coactivator CBP
Contreras-Martos, Sara; Piai, Alessandro; Kosol, Simone; Varadi, Mihaly; Bekesi, Angela; Lebrun, Pierre; Volkov, Alexander N.; Gevaert, Kris; Pierattelli, Roberta; Felli, Isabella C.; Tompa, Peter
Nature Publishing Group UK Scientific Reports 2017
pmc:PMC5498717, doi:10.1038/s41598-017-04611-x - Conformational Analysis of a Genetically Encoded FRET Biosensor by SAXS
Mertens, Haydyn D. T.; Piljic, Alen; Schultz, Carsten; Syergun, Dmitri I.
CELL PRESS Biophysical journal 102, 2866-2875(2012). doi:10.1016/j.bpj.2012.05.009 2012
doi:10.1016/j.bpj.2012.05.009 - Protein Delivery into Plant Cells: Toward In vivo Structural Biology
Cedeño, Cesyen; Pauwels, Kris; Tompa, Peter
Frontiers Media S.A. Frontiers in Plant Science 2017
pmc:PMC5395622, doi:10.3389/fpls.2017.00519 - Transient Structure and SH3 Interaction Sites in an Intrinsically Disordered Fragment of the Hepatitis C Virus Protein NS5A
Feuerstein, Sophie; Solyom, Zsofia; Aladag, Amine; Favier, Adrien; Schwarten, Melanie; Hoffmann, Silke; Willbold, Dieter; Brutscher, Bernhard
ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD Journal of molecular biology 420(4-5), 310–323 (2012). doi:10.1016/j.jmb.2012.04.023 2012
doi:10.1016/j.jmb.2012.04.023 - pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins
Varadi, M.; Kosol, S.; Sussman, J.; Svergun, Dmitri; Uversky, V. N.; Vendruscolo, M.; Wishart, D.; Wright, P. E.; Tompa, P.; Lebrun, P.; Valentini, Erica; Blackledge, M.; Dunker, A. K.; Felli, I. C.; Forman-Kay, J. D.; Kriwacki, R. W.; Pierattelli, R.
Oxford Univ. Press8619 Nucleic Acids Research 2014
pmc:PMC3964940, doi:10.1093/nar/gkt960 - Interaction of Nonstructural Protein 5A of the Hepatitis C Virus with Src Homology 3 Domains Using Noncanonical Binding Sites
Schwarten, Melanie; Solyom, Zsofia; Feuerstein, Sophie; Aladag, Amine; Hoffmann, Silke; Willbold, Dieter; Brutscher, Bernhard
AMER CHEMICAL SOC 2013
doi:10.1021/bi400363v - Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system
Guharoy, Mainak; Bhowmick, Pallab; Sallam, Mohamed; Tompa, Peter
Nature Publishing Group Nature Communications 2016
doi:10.1038/ncomms10239, pmc:PMC4729826 - iHADAMAC: A complementary tool for sequential resonance assignment of globular and highly disordered proteins
Feuerstein, Sophie; Plevin, Michael J.; Willbold, Dieter; Brutscher, Bernhard
ACADEMIC PRESS INC ELSEVIER SCIENCE Journal of magnetic resonance 214, 329 – 334 (2012). doi:10.1016/j.jmr.2011.10.019 2012
doi:10.1016/j.jmr.2011.10.019 - Extension of the sasCIF format and its applications for data processing and deposition
Kachala, Michael; Westbrook, John; Svergun, Dmitri
International Union of Crystallography Journal of Applied Crystallography 2016
doi:10.1107/S1600576715024942, pmc:PMC4762569 - Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering
Tria, Giancarlo; Mertens, Haydyn D. T.; Kachala, Michael; Svergun, Dmitri I.
International Union of Crystallography IUCrJ, Vol 2, Iss 2, Pp 207-217 (2015) 2015
doi:10.1107/S205225251500202X, pmc:PMC4392415 - Novel methods based on C-13 detection to study intrinsically disordered proteins
Felli, Isabella C.; Pierattelli, Roberta
ACADEMIC PRESS INC ELSEVIER SCIENCE 2014
doi:10.1016/j.jmr.2013.10.020 - The relationship between proteome size, structural disorder and organism complexity
Schad, Eva; Tompa, Peter; Hegyi, Hedi
BIOMED CENTRAL LTD Genome Biology 2011
pmc:PMC3334615, doi:10.1186/gb-2011-12-12-r120 - Highly Efficient NMR Assignment of Intrinsically Disordered Proteins: Application to B- and T Cell Receptor Domains
Isaksson, Linnea; Mayzel, Maxim; Saline, Maria; Pedersen, Anders; Rosenlow, Joakim; Brutscher, Bernhard; Karlsson, B. Goran; Orekhov, Vladislav Y.
PUBLIC LIBRARY SCIENCE PLoS ONE 2013
doi:10.1371/journal.pone.0062947, pmc:PMC3647075 - Protein Disorder Prevails under Crowded Conditions
Szasz, Cs.; Alexa, A.; Toth, K.; Rakacs, M.; Langowski, J.; Tompa, P.
AMER CHEMICAL SOC 2011
doi:10.1021/bi200365J - Unstructural biology coming of age
Tompa, Peter
CURRENT BIOLOGY LTD 2011
doi:10.1016/j.sbi.2011.03.012 - The Levinthal paradox of the interactome
Tompa, Peter; Rose, George D
Wiley Subscription Services, Inc., A Wiley Company 2011
doi:10.1002/pro.747 - NMR Spectroscopic Studies of Intrinsically Disordered Proteins at Near-Physiological Conditions
Gil, Sergio; Hosek, Tomas; Solyom, Zsofia; Kuemmerle, Rainer; Brutscher, Bernhard; Pierattelli, Roberta; Felli, Isabella C.
WILEY-V C H VERLAG GMBH 2013
doi:10.1002/anie.201304272 - Intrinsic disorder in cell signaling and gene transcription
Tantos, Agnes; Han, Kyou-Hoon; Tompa, Peter
ELSEVIER IRELAND LTD 2012
doi:10.1016/j.mce.2011.07.015 - Structural disorder in proteins brings order to crystal growth in biomineralization
Kalmar, Lajos; Homola, Daniel; Varga, Gabor; Tompa, Peter
ELSEVIER SCIENCE INC 2012
doi:10.1016/j.bone.2012.05.009 - Long-Range Interactions in Nonsense-Mediated mRNA Decay Are Mediated by Intrinsically Disordered Protein Regions
Kalmar, Lajos; Acs, Veronika; Silhavy, Daniel; Tompa, Peter
ACADEMIC PRESS LTD- ELSEVIER SCIENCE LTD 2012
doi:10.1016/j.jmb.2012.09.002 - SASBDB, a repository for biological small-angle scattering data
Valentini, Erica; Kikhney, Alexey G.; Previtali, Gianpietro; Jeffries, Cy M.; Svergun, Dmitri I.
Oxford University Press Nucleic Acids Research 2014
pmc:PMC4383894, doi:10.1093/nar/gku1047 - Distinct Hydration Properties of Wild-Type and Familial Point Mutant A53T of alpha-Synuclein Associated with Parkinson’s Disease
Hazy, E.; Bokor, M.; Kalmar, L.; Gelencser, A.; Kamasa, P.; Han, K-H; Tompa, K.; Tompa, P.
CELL PRESS 2011
doi:10.1016/j.bpj.2011.08.052 - Generation of Mucopolysaccharidosis type II (MPS II) human induced pluripotent stem cell (iPSC) line from a 7-year-old male with pathogenic IDS mutation
Varga, Eszter; Nemes, Csilla; Bock, István; Varga, Norbert; Fehér, Anita; Kobolák, Julianna; Dinnyés, András
Elsevier BV 2016
doi:10.1016/j.scr.2016.09.034 - Conformational Plasticity of the Essential Membrane-associated Mannosyltransferase PimA from Mycobacteria
Giganti, D.; Alegre-Cebollada, J.; Urresti, S.; Albesa-Jove, D.; Rodrigo-Unzueta, A.; Comino, N.; Kachala, M.; Lopez-Fernandez, S.; Svergun, D. I.; Fernandez, J. M.; Guerin, M. E.
AMER SOC BIOCHEMISTRY MOLECULAR BIOLOGY INC Journal of Biological Chemistry; Vol 288 2013
doi:10.3204/DESY-2014-01118, doi:10.1074/jbc.M113.462705 - Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy
Piai, Alessandro; Eduardo o, Calçada; Tarenzi, Thomas; Grande, Alessandro del; Varadi, Mihaly; Tompa, Peter; Felli, ISABELLA CATERINA; Pierattelli, Roberta
The Biophysical Society 2016
doi:10.1016/j.bpj.2015.11.3516 - Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins
Piai, Alessandro; Gonnelli, Leonardo; Felli, Isabella C.; Pierattelli, Roberta; Kazimierczuk, Krzysztof; Grudziąż, Katarzyna; Koźmiński, Wiktor; Zawadzka-Kazimierczuk, Anna
Springer Netherlands Journal of Biomolecular Nmr 2016
doi:10.13039/501100000780, doi:10.1007/s10858-016-0024-2, pmc:PMC4824835, doi:10.13039/501100001870 - Generation of human induced pluripotent stem cell (iPSC) line from an unaffected female carrier of Mucopolysaccharidosis type II (MPS II) disorder
Varga, Eszter; Nemes, Csilla; Kovács, Eszter; Bock, István; Varga, Norbert; Fehér, Anita; Dinnyés, András; Kobolák, Julianna
Elsevier BV 2016
doi:10.1016/j.scr.2016.09.035 - ATSAS 2.8 : a comprehensive data analysis suite for small-angle scattering from macromolecular solutions
Franke, D.; Petoukhov, M. V.; Konarev, P. V.; Panjkovich, A.; Tuukkanen, A.; Mertens, H. D. T.; Kikhney, A. G.; Hajizadeh, N. R.; Franklin, J. M.; Jeffries, C. M.; Svergun, D. I.
International Union of Crystallography Journal of Applied Crystallography 2017
pmc:PMC5541357, doi:10.1107/S1600576717007786 - Formation Kinetics and Structural Features of Beta-Amyloid Aggregates by Sedimented Solute NMR
Ivano, Bertini; Gianluca, Gallo; Magdalena, Korsak; Claudio, Luchinat; Jiafei, Mao; Enrico, Ravera2013
doi:10.1002/cbic.201300141 - Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements
Fuertes, Gustavo; Banterle, Niccolò; Ruff, Kiersten M.; Chowdhury, Aritra; Mercadante, Davide; Koehler, Christine; Kachala, Michael; Estrada Girona, Gemma; Milles, Sigrid; Mishra, Ankur; Onck, Patrick R.; Gräter, Frauke; Esteban-Martín, Santiago; Pappu, Rohit V.; Svergun, Dmitri I.; Lemke, Edward A.
National Academy of Sciences urn:issn:0027-8424 2017
doi:10.1073/pnas.1704692114 - The crossroads between cancer stem cells and aging
Franco, Sara Santos; Raveh-Amit, Hadas; Kobolák, Julianna; Alqahtani, Mohammed H; Mobasheri, Ali; Dinnyes, András
Springer Nature BMC Cancer 2015
doi:10.1186/1471-2407-15-s1-s1, pmc:PMC4331724 - 1H-detected solid-state NMR of proteins entrapped in bioinspired silica: a new tool for biomaterials characterization
Ravera, Enrico; Cerofolini, Linda; Martelli, Tommaso; Louka, Alexandra; Fragai, Marco; Luchinat, Claudio
Nature Publishing Group Scientific Reports 2016
doi:10.1038/srep27851, pmc:PMC4899708 - BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins
Solyom, Zsofia; Schwarten, Melanie; Geist, Leonhard; Konrat, Robert; Willbold, Dieter; Brutscher, Bernhard
SPRINGER 2013
doi:10.1007/s10858-013-9715-0 - Structure et dynamique des régions intrinsèquement désordonnées des MAPK
Kragelj , Jaka
HAL CCSD Biomolecules [q-bio.BM]. Université de Grenoble, 2014. English. 〈NNT : 2014GRENV060〉 2014 - Molecular Basis of Histone Tail Recognition by Human TIP5 PHD Finger and Bromodomain of the Chromatin Remodeling Complex NoRC
Tallant, Cynthia; Valentini, Erica; Fedorov, Oleg; Overvoorde, Lois; Ferguson, Fleur M.; Filippakopoulos, Panagis; Svergun, Dmitri I.; Knapp, Stefan; Ciulli, Alessio
Cell Press Structure(London, England:1993) 2015
pmc:PMC4291147, doi:10.1016/j.str.2014.10.017 - Is aging a barrier to reprogramming? Lessons from induced pluripotent stem cells
Phanthong, Phetcharat; Raveh-Amit, Hadas; Li, Tong; Kitiyanant, Yindee; Dinnyes, Andras
SPRINGER 2013
doi:10.1007/s10522-013-9455-2 - Boolean Modelling Reveals New Regulatory Connections between Transcription Factors Orchestrating the Development of the Ventral Spinal Cord
Lovrics, Anna; Gao, Yu; Juhász, Bianka; Bock, István; Byrne, Helen M.; Dinnyés, András; Kovács, Krisztián A.
Public Library of Science PLoS ONE, Vol 9, Iss 11, p e111430 (2014) 2014
doi:10.1371/journal.pone.0111430, pmc:PMC4232242 - Tissue resident stem cells: till death do us part
Raveh-Amit, Hadas; Berzsenyi, Sara; Vas, Virag; Ye, Danna; Dinnyes, Andras
Springer Nature Biogerontology 2013
pmc:PMC3879821, doi:10.1007/s10522-013-9469-9 - Generation of mouse induced pluripotent stem cells from different genetic backgrounds using Sleeping beauty transposon mediated gene transfer
Muenthaisong, Suchitra; Ujhelly, Olga; Polgar, Zsuzsanna; Varga, Eszter; Ivics, Zoltan; Pirity, Melinda K.; Dinnyes, Andras
ELSEVIER INC Experimental Cell Research 2012
doi:10.1016/j.yexcr.2012.07.014
